Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Gm9987-201ENSMUST00000069768 567 ntBASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Col13a1Q9R1N9 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Gm11643-201ENSMUST00000119578 864 ntBASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col13a1Q9R1N9 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col13a1Q9R1N9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Golph3-202ENSMUST00000226517 2359 ntBASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 AC154649.1-201ENSMUST00000227392 384 ntBASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col13a1Q9R1N9 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Gm37055-201ENSMUST00000191866 133 ntBASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col13a1Q9R1N9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Gm9484-201ENSMUST00000195892 1159 ntBASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col13a1Q9R1N9 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Col13a1Q9R1N9 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms