Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 AC122428.2-201ENSMUST00000216321 1832 ntBASIC16.29■□□□□ 0.2
Nubp1Q9R060 Snhg20-203ENSMUST00000182811 2153 ntBASIC16.28■□□□□ 0.2
Nubp1Q9R060 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.28■□□□□ 0.2
Nubp1Q9R060 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nubp1Q9R060 Gm34220-201ENSMUST00000223001 2709 ntBASIC16.28■□□□□ 0.2
Nubp1Q9R060 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC16.28■□□□□ 0.2
Nubp1Q9R060 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC16.27■□□□□ 0.2
Nubp1Q9R060 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Nubp1Q9R060 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.26■□□□□ 0.19
Nubp1Q9R060 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.26■□□□□ 0.19
Nubp1Q9R060 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Nubp1Q9R060 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Nubp1Q9R060 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Gm44711-201ENSMUST00000205414 1264 ntBASIC16.25■□□□□ 0.19
Nubp1Q9R060 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Nubp1Q9R060 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Nubp1Q9R060 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms