Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Cdc40Q9DC48 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Cdc40Q9DC48 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdc40Q9DC48 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdc40Q9DC48 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdc40Q9DC48 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Cdc40Q9DC48 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Cdc40Q9DC48 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Cdc40Q9DC48 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cdc40Q9DC48 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cdc40Q9DC48 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Cdc40Q9DC48 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Cdc40Q9DC48 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cdc40Q9DC48 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Cdc40Q9DC48 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.33■□□□□ 0.36
Cdc40Q9DC48 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Cdc40Q9DC48 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Gm27011-201ENSMUST00000182352 972 ntBASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Cdc40Q9DC48 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Cdc40Q9DC48 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Gm12933-201ENSMUST00000120203 872 ntBASIC17.3■□□□□ 0.36
Cdc40Q9DC48 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.3■□□□□ 0.36
Cdc40Q9DC48 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Cdc40Q9DC48 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms