Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Cldnd1Q9CQX5 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.3■□□□□ 0.68
Cldnd1Q9CQX5 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cldnd1Q9CQX5 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cldnd1Q9CQX5 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cldnd1Q9CQX5 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cldnd1Q9CQX5 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cldnd1Q9CQX5 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.28■□□□□ 0.68
Cldnd1Q9CQX5 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.28■□□□□ 0.68
Cldnd1Q9CQX5 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cldnd1Q9CQX5 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Gm30025-201ENSMUST00000218555 728 ntBASIC19.27■□□□□ 0.68
Cldnd1Q9CQX5 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Cldnd1Q9CQX5 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cldnd1Q9CQX5 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cldnd1Q9CQX5 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cldnd1Q9CQX5 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Gm7367-201ENSMUST00000057611 492 ntBASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cldnd1Q9CQX5 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cldnd1Q9CQX5 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cldnd1Q9CQX5 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms