Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Use1Q9CQ56 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Gm12251-201ENSMUST00000117893 792 ntBASIC17.68■□□□□ 0.42
Use1Q9CQ56 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Use1Q9CQ56 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC17.67■□□□□ 0.42
Use1Q9CQ56 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.67■□□□□ 0.42
Use1Q9CQ56 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.67■□□□□ 0.42
Use1Q9CQ56 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Gm11421-201ENSMUST00000122124 294 ntBASIC17.66■□□□□ 0.42
Use1Q9CQ56 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Flvcr1-202ENSMUST00000191946 1216 ntBASIC17.66■□□□□ 0.42
Use1Q9CQ56 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Use1Q9CQ56 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.65■□□□□ 0.42
Use1Q9CQ56 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Use1Q9CQ56 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Use1Q9CQ56 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Use1Q9CQ56 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Use1Q9CQ56 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.64■□□□□ 0.42
Use1Q9CQ56 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Use1Q9CQ56 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Use1Q9CQ56 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms