Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 AC160393.1-201ENSMUST00000218378 1279 ntBASIC25.89■■□□□ 1.74
Usp40Q8BWR4 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Usp40Q8BWR4 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Usp40Q8BWR4 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC25.89■■□□□ 1.73
Usp40Q8BWR4 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Usp40Q8BWR4 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Usp40Q8BWR4 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Usp40Q8BWR4 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
Usp40Q8BWR4 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Usp40Q8BWR4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Golph3-202ENSMUST00000226517 2359 ntBASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Usp40Q8BWR4 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Usp40Q8BWR4 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Usp40Q8BWR4 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC25.85■■□□□ 1.73
Usp40Q8BWR4 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC25.85■■□□□ 1.73
Usp40Q8BWR4 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Usp40Q8BWR4 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Usp40Q8BWR4 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Gm13181-201ENSMUST00000120117 1069 ntBASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Usp40Q8BWR4 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Usp40Q8BWR4 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Usp40Q8BWR4 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Usp40Q8BWR4 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC25.83■■□□□ 1.73
Usp40Q8BWR4 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Usp40Q8BWR4 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Usp40Q8BWR4 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC25.83■■□□□ 1.73
Usp40Q8BWR4 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
Usp40Q8BWR4 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Gm2399-201ENSMUST00000104944 225 ntBASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Usp40Q8BWR4 AC124603.1-201ENSMUST00000223843 308 ntBASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
Usp40Q8BWR4 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 AC140264.2-202ENSMUST00000218746 817 ntBASIC25.81■■□□□ 1.72
Usp40Q8BWR4 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Usp40Q8BWR4 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC25.8■■□□□ 1.72
Usp40Q8BWR4 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Gm21596-201ENSMUST00000178049 1316 ntBASIC25.79■■□□□ 1.72
Usp40Q8BWR4 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC25.79■■□□□ 1.72
Usp40Q8BWR4 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Usp40Q8BWR4 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms