Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lig4Q8BTF7 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lig4Q8BTF7 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Lig4Q8BTF7 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lig4Q8BTF7 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lig4Q8BTF7 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.83■□□□□ 0.77
Lig4Q8BTF7 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Lig4Q8BTF7 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Lig4Q8BTF7 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Lig4Q8BTF7 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Lig4Q8BTF7 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lig4Q8BTF7 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.81■□□□□ 0.76
Lig4Q8BTF7 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Gm13148-201ENSMUST00000118892 745 ntBASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lig4Q8BTF7 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig4Q8BTF7 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Lig4Q8BTF7 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
Lig4Q8BTF7 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Lig4Q8BTF7 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Lig4Q8BTF7 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.8■□□□□ 0.76
Lig4Q8BTF7 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lig4Q8BTF7 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.8■□□□□ 0.76
Lig4Q8BTF7 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Lig4Q8BTF7 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Gm5408-201ENSMUST00000197998 747 ntBASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lig4Q8BTF7 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.77■□□□□ 0.76
Lig4Q8BTF7 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.77■□□□□ 0.76
Lig4Q8BTF7 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms