Protein–RNA interactions for Protein: Q8BMK4

Ckap4, Cytoskeleton-associated protein 4, mousemouse

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ckap4Q8BMK4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ckap4Q8BMK4 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.71■□□□□ 0.43
Ckap4Q8BMK4 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ckap4Q8BMK4 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Ckap4Q8BMK4 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Ckap4Q8BMK4 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Ckap4Q8BMK4 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Ckap4Q8BMK4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Wdr70-203ENSMUST00000227371 1130 ntBASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Ckap4Q8BMK4 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Ckap4Q8BMK4 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Ckap4Q8BMK4 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ckap4Q8BMK4 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Gm12251-201ENSMUST00000117893 792 ntBASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Gm45417-201ENSMUST00000209533 758 ntBASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ckap4Q8BMK4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ckap4Q8BMK4 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms