Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
Trim41Q5NCC3 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC32.68■■■□□ 2.82
Trim41Q5NCC3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC32.68■■■□□ 2.82
Trim41Q5NCC3 Gm20472-201ENSMUST00000174403 1240 ntBASIC32.68■■■□□ 2.82
Trim41Q5NCC3 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Trim41Q5NCC3 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Trim41Q5NCC3 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC32.66■■■□□ 2.82
Trim41Q5NCC3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
Trim41Q5NCC3 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Trim41Q5NCC3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
Trim41Q5NCC3 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
Trim41Q5NCC3 Gm12896-201ENSMUST00000118430 226 ntBASIC32.65■■■□□ 2.82
Trim41Q5NCC3 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC32.65■■■□□ 2.82
Trim41Q5NCC3 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC32.64■■■□□ 2.82
Trim41Q5NCC3 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
Trim41Q5NCC3 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Trim41Q5NCC3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC32.64■■■□□ 2.82
Trim41Q5NCC3 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC32.64■■■□□ 2.82
Trim41Q5NCC3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Trim41Q5NCC3 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Trim41Q5NCC3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC32.64■■■□□ 2.82
Trim41Q5NCC3 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
Trim41Q5NCC3 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Gm19094-201ENSMUST00000209791 1246 ntBASIC32.62■■■□□ 2.81
Trim41Q5NCC3 AC153881.1-201ENSMUST00000214448 284 ntBASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Trim41Q5NCC3 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC32.61■■■□□ 2.81
Trim41Q5NCC3 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC32.61■■■□□ 2.81
Trim41Q5NCC3 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Trim41Q5NCC3 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
Trim41Q5NCC3 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC32.61■■■□□ 2.81
Trim41Q5NCC3 Hsf1-207ENSMUST00000228371 2102 ntBASIC32.61■■■□□ 2.81
Trim41Q5NCC3 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Trim41Q5NCC3 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
Trim41Q5NCC3 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Gm11249-201ENSMUST00000117071 859 ntBASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Gm6433-201ENSMUST00000118634 875 ntBASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
Trim41Q5NCC3 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Trim41Q5NCC3 Dio3-201ENSMUST00000097228 1449 ntBASIC32.59■■■□□ 2.81
Trim41Q5NCC3 Gm5540-201ENSMUST00000131852 1848 ntBASIC32.58■■■□□ 2.81
Trim41Q5NCC3 Gm43672-201ENSMUST00000199072 1731 ntBASIC32.58■■■□□ 2.81
Trim41Q5NCC3 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC32.58■■■□□ 2.81
Trim41Q5NCC3 Gm2559-201ENSMUST00000201323 363 ntBASIC32.58■■■□□ 2.81
Trim41Q5NCC3 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC32.58■■■□□ 2.81
Trim41Q5NCC3 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
Trim41Q5NCC3 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Trim41Q5NCC3 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Trim41Q5NCC3 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Trim41Q5NCC3 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Trim41Q5NCC3 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Gm14464-201ENSMUST00000119658 1254 ntBASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Gm44549-201ENSMUST00000208351 577 ntBASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Gm5867-201ENSMUST00000063197 592 ntBASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Trim41Q5NCC3 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
Trim41Q5NCC3 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Trim41Q5NCC3 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms