Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Cdh11P55288 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdh11P55288 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.03■□□□□ 0.32
Cdh11P55288 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.03■□□□□ 0.32
Cdh11P55288 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.03■□□□□ 0.32
Cdh11P55288 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.03■□□□□ 0.32
Cdh11P55288 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 AA386476-201ENSMUST00000098781 1665 ntBASIC17.03■□□□□ 0.32
Cdh11P55288 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdh11P55288 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Cdh11P55288 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdh11P55288 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cdh11P55288 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.02■□□□□ 0.32
Cdh11P55288 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdh11P55288 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdh11P55288 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Cdh11P55288 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdh11P55288 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cdh11P55288 Slc35b2-207ENSMUST00000226086 850 ntBASIC17.02■□□□□ 0.32
Cdh11P55288 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Cdh11P55288 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Cdh11P55288 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
Cdh11P55288 Rarb-207ENSMUST00000225921 2756 ntBASIC17.02■□□□□ 0.31
Cdh11P55288 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdh11P55288 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
Cdh11P55288 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdh11P55288 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdh11P55288 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdh11P55288 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Cdh11P55288 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Cdh11P55288 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC17.01■□□□□ 0.31
Cdh11P55288 Smad6-203ENSMUST00000179458 273 ntBASIC17.01■□□□□ 0.31
Cdh11P55288 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Cdh11P55288 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
Cdh11P55288 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdh11P55288 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17■□□□□ 0.31
Cdh11P55288 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Cdh11P55288 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
Cdh11P55288 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17■□□□□ 0.31
Cdh11P55288 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
Cdh11P55288 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Cdh11P55288 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdh11P55288 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC16.99■□□□□ 0.31
Cdh11P55288 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Grk6-206ENSMUST00000224995 2971 ntBASIC16.99■□□□□ 0.31
Cdh11P55288 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC16.99■□□□□ 0.31
Cdh11P55288 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC16.99■□□□□ 0.31
Cdh11P55288 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdh11P55288 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms