Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Sox3P53784 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Sox3P53784 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Sox3P53784 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Sox3P53784 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Sox3P53784 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.85■□□□□ 0.45
Sox3P53784 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Sox3P53784 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Sox3P53784 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Sox3P53784 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.84■□□□□ 0.45
Sox3P53784 Trmt13-210ENSMUST00000198454 880 ntBASIC17.84■□□□□ 0.45
Sox3P53784 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.84■□□□□ 0.45
Sox3P53784 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Sox3P53784 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Sox3P53784 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Sox3P53784 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Sox3P53784 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.83■□□□□ 0.44
Sox3P53784 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.83■□□□□ 0.44
Sox3P53784 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.83■□□□□ 0.44
Sox3P53784 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Sox3P53784 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.83■□□□□ 0.44
Sox3P53784 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sox3P53784 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sox3P53784 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sox3P53784 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sox3P53784 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Sox3P53784 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Sox3P53784 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Sox3P53784 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sox3P53784 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sox3P53784 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sox3P53784 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
Sox3P53784 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sox3P53784 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sox3P53784 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
Sox3P53784 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.82■□□□□ 0.44
Sox3P53784 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.82■□□□□ 0.44
Sox3P53784 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sox3P53784 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Sox3P53784 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
Sox3P53784 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Gm13146-201ENSMUST00000118508 780 ntBASIC17.81■□□□□ 0.44
Sox3P53784 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.81■□□□□ 0.44
Sox3P53784 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Sox3P53784 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Sox3P53784 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Sox3P53784 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Sox3P53784 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Sox3P53784 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Sox3P53784 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms