Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shmt1P50431 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shmt1P50431 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Shmt1P50431 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shmt1P50431 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Shmt1P50431 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Shmt1P50431 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shmt1P50431 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Shmt1P50431 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.85■□□□□ 0.77
Shmt1P50431 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Shmt1P50431 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Shmt1P50431 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shmt1P50431 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
Shmt1P50431 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shmt1P50431 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Shmt1P50431 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
Shmt1P50431 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.84■□□□□ 0.77
Shmt1P50431 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.84■□□□□ 0.77
Shmt1P50431 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Shmt1P50431 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Shmt1P50431 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Shmt1P50431 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Shmt1P50431 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Shmt1P50431 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.77
Shmt1P50431 Gm7290-201ENSMUST00000104990 617 ntBASIC19.83■□□□□ 0.77
Shmt1P50431 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Shmt1P50431 Gm12918-201ENSMUST00000120234 636 ntBASIC19.83■□□□□ 0.77
Shmt1P50431 Gm15710-201ENSMUST00000121821 636 ntBASIC19.83■□□□□ 0.77
Shmt1P50431 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.83■□□□□ 0.77
Shmt1P50431 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.83■□□□□ 0.77
Shmt1P50431 Gm5075-201ENSMUST00000196916 622 ntBASIC19.83■□□□□ 0.77
Shmt1P50431 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.83■□□□□ 0.77
Shmt1P50431 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Shmt1P50431 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.83■□□□□ 0.77
Shmt1P50431 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.83■□□□□ 0.77
Shmt1P50431 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Shmt1P50431 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Shmt1P50431 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.82■□□□□ 0.76
Shmt1P50431 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Shmt1P50431 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
Shmt1P50431 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.82■□□□□ 0.76
Shmt1P50431 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Shmt1P50431 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.81■□□□□ 0.76
Shmt1P50431 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shmt1P50431 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shmt1P50431 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shmt1P50431 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shmt1P50431 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shmt1P50431 Gm6211-202ENSMUST00000167849 925 ntBASIC19.81■□□□□ 0.76
Shmt1P50431 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.81■□□□□ 0.76
Shmt1P50431 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
Shmt1P50431 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Shmt1P50431 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.81■□□□□ 0.76
Shmt1P50431 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shmt1P50431 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Shmt1P50431 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shmt1P50431 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shmt1P50431 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
Shmt1P50431 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shmt1P50431 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Shmt1P50431 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.8■□□□□ 0.76
Shmt1P50431 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.8■□□□□ 0.76
Shmt1P50431 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shmt1P50431 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shmt1P50431 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Shmt1P50431 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Iqck-206ENSMUST00000208658 2891 ntBASIC19.79■□□□□ 0.76
Shmt1P50431 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
Shmt1P50431 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.79■□□□□ 0.76
Shmt1P50431 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.79■□□□□ 0.76
Shmt1P50431 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Shmt1P50431 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Shmt1P50431 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Shmt1P50431 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Shmt1P50431 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms