Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.88■□□□□ 0.45
Cdx2P43241 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx2P43241 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx2P43241 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Cdx2P43241 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx2P43241 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx2P43241 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx2P43241 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx2P43241 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Cdx2P43241 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC17.87■□□□□ 0.45
Cdx2P43241 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Cdx2P43241 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdx2P43241 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Cdx2P43241 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC17.87■□□□□ 0.45
Cdx2P43241 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Cdx2P43241 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Cdx2P43241 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Cdx2P43241 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.87■□□□□ 0.45
Cdx2P43241 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Cdx2P43241 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
Cdx2P43241 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Cdx2P43241 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Cdx2P43241 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Cdx2P43241 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx2P43241 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Cdx2P43241 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx2P43241 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.85■□□□□ 0.45
Cdx2P43241 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Cdx2P43241 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Cdx2P43241 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx2P43241 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC17.85■□□□□ 0.45
Cdx2P43241 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.85■□□□□ 0.45
Cdx2P43241 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx2P43241 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx2P43241 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Cdx2P43241 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdx2P43241 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC17.84■□□□□ 0.45
Cdx2P43241 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Cdx2P43241 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Cdx2P43241 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdx2P43241 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdx2P43241 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdx2P43241 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Cdx2P43241 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Cdx2P43241 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdx2P43241 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdx2P43241 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx2P43241 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Cdx2P43241 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx2P43241 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx2P43241 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC17.83■□□□□ 0.44
Cdx2P43241 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx2P43241 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx2P43241 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cdx2P43241 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Cdx2P43241 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.82■□□□□ 0.44
Cdx2P43241 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Cdx2P43241 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.82■□□□□ 0.44
Cdx2P43241 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdx2P43241 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.82■□□□□ 0.44
Cdx2P43241 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdx2P43241 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.81■□□□□ 0.44
Cdx2P43241 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC17.81■□□□□ 0.44
Cdx2P43241 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.81■□□□□ 0.44
Cdx2P43241 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Cdx2P43241 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms