Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.72■□□□□ 0.43
Msx1P13297 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Msx1P13297 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Gm10616-201ENSMUST00000205285 2127 ntBASIC17.72■□□□□ 0.43
Msx1P13297 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
Msx1P13297 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Msx1P13297 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.72■□□□□ 0.43
Msx1P13297 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Msx1P13297 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Msx1P13297 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msx1P13297 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.71■□□□□ 0.43
Msx1P13297 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Msx1P13297 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Msx1P13297 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC17.71■□□□□ 0.43
Msx1P13297 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.71■□□□□ 0.43
Msx1P13297 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Msx1P13297 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Msx1P13297 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Msx1P13297 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msx1P13297 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msx1P13297 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msx1P13297 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msx1P13297 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.7■□□□□ 0.42
Msx1P13297 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.7■□□□□ 0.42
Msx1P13297 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.7■□□□□ 0.42
Msx1P13297 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.7■□□□□ 0.42
Msx1P13297 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Msx1P13297 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Msx1P13297 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Msx1P13297 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msx1P13297 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.7■□□□□ 0.42
Msx1P13297 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Msx1P13297 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Msx1P13297 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msx1P13297 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
Msx1P13297 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Msx1P13297 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.69■□□□□ 0.42
Msx1P13297 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Msx1P13297 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Msx1P13297 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Msx1P13297 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
Msx1P13297 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
Msx1P13297 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Msx1P13297 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msx1P13297 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Msx1P13297 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Msx1P13297 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Msx1P13297 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Msx1P13297 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msx1P13297 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
Msx1P13297 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Msx1P13297 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msx1P13297 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.67■□□□□ 0.42
Msx1P13297 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msx1P13297 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msx1P13297 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Msx1P13297 Gm6211-202ENSMUST00000167849 925 ntBASIC17.67■□□□□ 0.42
Msx1P13297 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msx1P13297 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.67■□□□□ 0.42
Msx1P13297 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.67■□□□□ 0.42
Msx1P13297 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Msx1P13297 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
Msx1P13297 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Msx1P13297 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
Msx1P13297 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msx1P13297 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msx1P13297 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msx1P13297 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Msx1P13297 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Msx1P13297 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Msx1P13297 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms