Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
Chmp6P0C0A3 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.33■□□□□ 0.84
Chmp6P0C0A3 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chmp6P0C0A3 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chmp6P0C0A3 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Chmp6P0C0A3 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 AV356131-201ENSMUST00000206201 750 ntBASIC20.3■□□□□ 0.84
Chmp6P0C0A3 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chmp6P0C0A3 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chmp6P0C0A3 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp6P0C0A3 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp6P0C0A3 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Chmp6P0C0A3 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms