Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd3B1AR17 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Chd3B1AR17 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Chd3B1AR17 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Chd3B1AR17 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.42■□□□□ 0.54
Chd3B1AR17 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd3B1AR17 Notumos-201ENSMUST00000151998 2659 ntBASIC18.42■□□□□ 0.54
Chd3B1AR17 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd3B1AR17 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd3B1AR17 Gm43672-201ENSMUST00000199072 1731 ntBASIC18.42■□□□□ 0.54
Chd3B1AR17 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.42■□□□□ 0.54
Chd3B1AR17 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC18.41■□□□□ 0.54
Chd3B1AR17 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.41■□□□□ 0.54
Chd3B1AR17 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC18.41■□□□□ 0.54
Chd3B1AR17 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Chd3B1AR17 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Chd3B1AR17 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Chd3B1AR17 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC18.4■□□□□ 0.54
Chd3B1AR17 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.4■□□□□ 0.54
Chd3B1AR17 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Chd3B1AR17 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Gm19094-201ENSMUST00000209791 1246 ntBASIC18.4■□□□□ 0.54
Chd3B1AR17 Gm15853-202ENSMUST00000195518 2041 ntBASIC18.4■□□□□ 0.54
Chd3B1AR17 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd3B1AR17 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Chd3B1AR17 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Chd3B1AR17 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Chd3B1AR17 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Chd3B1AR17 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd3B1AR17 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Chd3B1AR17 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.39■□□□□ 0.53
Chd3B1AR17 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Chd3B1AR17 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Chd3B1AR17 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd3B1AR17 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd3B1AR17 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd3B1AR17 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd3B1AR17 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
Chd3B1AR17 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Chd3B1AR17 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.38■□□□□ 0.53
Chd3B1AR17 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Chd3B1AR17 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.38■□□□□ 0.53
Chd3B1AR17 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.38■□□□□ 0.53
Chd3B1AR17 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC18.38■□□□□ 0.53
Chd3B1AR17 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Chd3B1AR17 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.37■□□□□ 0.53
Chd3B1AR17 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC18.37■□□□□ 0.53
Chd3B1AR17 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.37■□□□□ 0.53
Chd3B1AR17 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Chd3B1AR17 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.37■□□□□ 0.53
Chd3B1AR17 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd3B1AR17 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.36■□□□□ 0.53
Chd3B1AR17 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.36■□□□□ 0.53
Chd3B1AR17 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Chd3B1AR17 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms