Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trim3Q9R1R2 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.62■□□□□ 0.41
Trim3Q9R1R2 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.62■□□□□ 0.41
Trim3Q9R1R2 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trim3Q9R1R2 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Golph3-205ENSMUST00000228671 2842 ntBASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Trim3Q9R1R2 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trim3Q9R1R2 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Trim3Q9R1R2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trim3Q9R1R2 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.58■□□□□ 0.4
Trim3Q9R1R2 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.58■□□□□ 0.4
Trim3Q9R1R2 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim3Q9R1R2 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Trim3Q9R1R2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim3Q9R1R2 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trim3Q9R1R2 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trim3Q9R1R2 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Gm42642-201ENSMUST00000200683 355 ntBASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trim3Q9R1R2 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms