Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Rpap3Q9D706 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Rpap3Q9D706 Golph3-202ENSMUST00000226517 2359 ntBASIC20.79■□□□□ 0.92
Rpap3Q9D706 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Rpap3Q9D706 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.79■□□□□ 0.92
Rpap3Q9D706 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.79■□□□□ 0.92
Rpap3Q9D706 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.79■□□□□ 0.92
Rpap3Q9D706 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Rpap3Q9D706 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Rpap3Q9D706 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.79■□□□□ 0.92
Rpap3Q9D706 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Rpap3Q9D706 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.78■□□□□ 0.92
Rpap3Q9D706 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.78■□□□□ 0.92
Rpap3Q9D706 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rpap3Q9D706 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Rpap3Q9D706 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rpap3Q9D706 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Rpap3Q9D706 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.76■□□□□ 0.91
Rpap3Q9D706 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.76■□□□□ 0.91
Rpap3Q9D706 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Rpap3Q9D706 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Rpap3Q9D706 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.75■□□□□ 0.91
Rpap3Q9D706 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rpap3Q9D706 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.74■□□□□ 0.91
Rpap3Q9D706 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
Rpap3Q9D706 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rpap3Q9D706 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms