Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Vps53Q8CCB4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Vps53Q8CCB4 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Vps53Q8CCB4 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Vps53Q8CCB4 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
Vps53Q8CCB4 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Vps53Q8CCB4 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
Vps53Q8CCB4 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
Vps53Q8CCB4 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.83■■□□□ 1.09
Vps53Q8CCB4 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.83■■□□□ 1.09
Vps53Q8CCB4 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Vps53Q8CCB4 Gm45640-201ENSMUST00000210665 1896 ntBASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
Vps53Q8CCB4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Reep4-203ENSMUST00000226563 1444 ntBASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Vps53Q8CCB4 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Gm27801-201ENSMUST00000184174 223 ntBASIC21.81■■□□□ 1.08
Vps53Q8CCB4 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Vps53Q8CCB4 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Vps53Q8CCB4 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Vps53Q8CCB4 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps53Q8CCB4 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps53Q8CCB4 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
Vps53Q8CCB4 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Vps53Q8CCB4 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
Vps53Q8CCB4 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Vps53Q8CCB4 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.77■■□□□ 1.08
Vps53Q8CCB4 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Vps53Q8CCB4 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vps53Q8CCB4 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Vps53Q8CCB4 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.77■■□□□ 1.08
Vps53Q8CCB4 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
Vps53Q8CCB4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Vps53Q8CCB4 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms