Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Trim56Q80VI1 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Gm6365-201ENSMUST00000054711 744 ntBASIC22.28■■□□□ 1.16
Trim56Q80VI1 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Trim56Q80VI1 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Trim56Q80VI1 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Trim56Q80VI1 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Trim56Q80VI1 Gm13148-201ENSMUST00000118892 745 ntBASIC22.26■■□□□ 1.15
Trim56Q80VI1 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Trim56Q80VI1 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Trim56Q80VI1 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
Trim56Q80VI1 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Gm12933-201ENSMUST00000120203 872 ntBASIC22.24■■□□□ 1.15
Trim56Q80VI1 Gm19094-201ENSMUST00000209791 1246 ntBASIC22.24■■□□□ 1.15
Trim56Q80VI1 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Rncr4-201ENSMUST00000194541 2234 ntBASIC22.24■■□□□ 1.15
Trim56Q80VI1 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Trim56Q80VI1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trim56Q80VI1 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trim56Q80VI1 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim56Q80VI1 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Trim56Q80VI1 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms