Protein–RNA interactions for Protein: Q80U87

Usp8, Ubiquitin carboxyl-terminal hydrolase 8, mousemouse

Predictions only

Length 1,080 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp8Q80U87 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp8Q80U87 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp8Q80U87 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.78■□□□□ 0.6
Usp8Q80U87 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.78■□□□□ 0.6
Usp8Q80U87 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Usp8Q80U87 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Usp8Q80U87 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Usp8Q80U87 Mir7075-201ENSMUST00000184187 82 ntBASIC18.78■□□□□ 0.6
Usp8Q80U87 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC18.78■□□□□ 0.6
Usp8Q80U87 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.78■□□□□ 0.6
Usp8Q80U87 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.78■□□□□ 0.6
Usp8Q80U87 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp8Q80U87 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Usp8Q80U87 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Usp8Q80U87 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp8Q80U87 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
Usp8Q80U87 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp8Q80U87 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Usp8Q80U87 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.77■□□□□ 0.6
Usp8Q80U87 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.77■□□□□ 0.6
Usp8Q80U87 Appbp2os-202ENSMUST00000206972 447 ntBASIC18.77■□□□□ 0.6
Usp8Q80U87 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp8Q80U87 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Usp8Q80U87 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Usp8Q80U87 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Usp8Q80U87 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.76■□□□□ 0.59
Usp8Q80U87 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.76■□□□□ 0.59
Usp8Q80U87 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.76■□□□□ 0.59
Usp8Q80U87 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.76■□□□□ 0.59
Usp8Q80U87 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.76■□□□□ 0.59
Usp8Q80U87 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp8Q80U87 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Usp8Q80U87 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Usp8Q80U87 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp8Q80U87 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp8Q80U87 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Usp8Q80U87 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.74■□□□□ 0.59
Usp8Q80U87 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Gm43173-201ENSMUST00000202246 593 ntBASIC18.74■□□□□ 0.59
Usp8Q80U87 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Usp8Q80U87 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Usp8Q80U87 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.74■□□□□ 0.59
Usp8Q80U87 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Usp8Q80U87 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp8Q80U87 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Usp8Q80U87 Gm27454-201ENSMUST00000185090 204 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms