Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddx58Q6Q899 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Ddx58Q6Q899 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddx58Q6Q899 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddx58Q6Q899 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ddx58Q6Q899 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ddx58Q6Q899 Gm10167-201ENSMUST00000150411 1479 ntBASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 AC124603.1-201ENSMUST00000223843 308 ntBASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Golph3-202ENSMUST00000226517 2359 ntBASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ddx58Q6Q899 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Ddx58Q6Q899 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC23.34■■□□□ 1.33
Ddx58Q6Q899 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ddx58Q6Q899 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
Ddx58Q6Q899 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ddx58Q6Q899 AC126028.2-201ENSMUST00000228100 1833 ntBASIC23.33■■□□□ 1.32
Ddx58Q6Q899 Gm43672-201ENSMUST00000199072 1731 ntBASIC23.33■■□□□ 1.32
Ddx58Q6Q899 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
Ddx58Q6Q899 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ddx58Q6Q899 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ddx58Q6Q899 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ddx58Q6Q899 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ddx58Q6Q899 Gm37856-201ENSMUST00000191634 999 ntBASIC23.3■■□□□ 1.32
Ddx58Q6Q899 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ddx58Q6Q899 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Ddx58Q6Q899 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC23.3■■□□□ 1.32
Ddx58Q6Q899 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Ddx58Q6Q899 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ddx58Q6Q899 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms