Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Shkbp1Q6P7W2 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Gm5643-201ENSMUST00000117081 966 ntBASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Shkbp1Q6P7W2 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Shkbp1Q6P7W2 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Shkbp1Q6P7W2 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Gm11249-201ENSMUST00000117071 859 ntBASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Shkbp1Q6P7W2 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Shkbp1Q6P7W2 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Shkbp1Q6P7W2 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Shkbp1Q6P7W2 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Shkbp1Q6P7W2 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Gm2399-201ENSMUST00000104944 225 ntBASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Shkbp1Q6P7W2 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms