Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Tpm4Q6IRU2 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 AC124603.1-201ENSMUST00000223843 308 ntBASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Tpm4Q6IRU2 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Gm9847-201ENSMUST00000052528 599 ntBASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Tpm4Q6IRU2 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.96■□□□□ 0.95
Tpm4Q6IRU2 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Tpm4Q6IRU2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Tpm4Q6IRU2 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Tpm4Q6IRU2 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Tpm4Q6IRU2 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Tpm4Q6IRU2 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms