Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usf1Q61069 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usf1Q61069 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Usf1Q61069 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usf1Q61069 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Usf1Q61069 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.19■□□□□ 0.34
Usf1Q61069 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Usf1Q61069 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usf1Q61069 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usf1Q61069 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Usf1Q61069 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.18■□□□□ 0.34
Usf1Q61069 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usf1Q61069 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
Usf1Q61069 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usf1Q61069 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Usf1Q61069 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Usf1Q61069 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usf1Q61069 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Usf1Q61069 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.18■□□□□ 0.34
Usf1Q61069 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Usf1Q61069 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Usf1Q61069 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.17■□□□□ 0.34
Usf1Q61069 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.17■□□□□ 0.34
Usf1Q61069 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Usf1Q61069 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Usf1Q61069 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.16■□□□□ 0.34
Usf1Q61069 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.16■□□□□ 0.34
Usf1Q61069 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Usf1Q61069 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Usf1Q61069 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
Usf1Q61069 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Usf1Q61069 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.15■□□□□ 0.34
Usf1Q61069 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Usf1Q61069 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Usf1Q61069 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Usf1Q61069 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Usf1Q61069 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.14■□□□□ 0.33
Usf1Q61069 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.14■□□□□ 0.33
Usf1Q61069 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.14■□□□□ 0.33
Usf1Q61069 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.14■□□□□ 0.33
Usf1Q61069 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.14■□□□□ 0.33
Usf1Q61069 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.14■□□□□ 0.33
Usf1Q61069 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usf1Q61069 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Usf1Q61069 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC17.13■□□□□ 0.33
Usf1Q61069 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.13■□□□□ 0.33
Usf1Q61069 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC17.13■□□□□ 0.33
Usf1Q61069 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usf1Q61069 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.13■□□□□ 0.33
Usf1Q61069 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Usf1Q61069 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.13■□□□□ 0.33
Usf1Q61069 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.12■□□□□ 0.33
Usf1Q61069 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Usf1Q61069 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.12■□□□□ 0.33
Usf1Q61069 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usf1Q61069 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms