Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav5d-4Q5R1F6 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Gm7860-201ENSMUST00000121190 879 ntBASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Gm43060-201ENSMUST00000200621 289 ntBASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 BC021767-201ENSMUST00000126387 1716 ntBASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav5d-4Q5R1F6 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav5d-4Q5R1F6 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trav5d-4Q5R1F6 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
Trav5d-4Q5R1F6 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC16.14■□□□□ 0.18
Trav5d-4Q5R1F6 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav5d-4Q5R1F6 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav5d-4Q5R1F6 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Gm21168-201ENSMUST00000199646 1096 ntBASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Gm2011-201ENSMUST00000203124 1263 ntBASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav5d-4Q5R1F6 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav5d-4Q5R1F6 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav5d-4Q5R1F6 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav5d-4Q5R1F6 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms