Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col28a1Q2UY11 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col28a1Q2UY11 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Col28a1Q2UY11 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col28a1Q2UY11 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Mir7075-201ENSMUST00000184187 82 ntBASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Gm21168-201ENSMUST00000199646 1096 ntBASIC18.2■□□□□ 0.5
Col28a1Q2UY11 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col28a1Q2UY11 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Gm43017-201ENSMUST00000198296 752 ntBASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col28a1Q2UY11 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col28a1Q2UY11 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col28a1Q2UY11 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 109.4 ms