Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Col6a1Q04857 Dio3-201ENSMUST00000097228 1449 ntBASIC20.78■□□□□ 0.92
Col6a1Q04857 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.78■□□□□ 0.92
Col6a1Q04857 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a1Q04857 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.77■□□□□ 0.92
Col6a1Q04857 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Col6a1Q04857 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a1Q04857 Gm37055-201ENSMUST00000191866 133 ntBASIC20.77■□□□□ 0.92
Col6a1Q04857 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.77■□□□□ 0.92
Col6a1Q04857 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a1Q04857 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a1Q04857 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a1Q04857 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a1Q04857 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col6a1Q04857 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col6a1Q04857 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col6a1Q04857 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col6a1Q04857 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
Col6a1Q04857 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col6a1Q04857 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Col6a1Q04857 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col6a1Q04857 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC20.76■□□□□ 0.91
Col6a1Q04857 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.76■□□□□ 0.91
Col6a1Q04857 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col6a1Q04857 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.76■□□□□ 0.91
Col6a1Q04857 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.75■□□□□ 0.91
Col6a1Q04857 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Col6a1Q04857 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Col6a1Q04857 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Col6a1Q04857 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Col6a1Q04857 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col6a1Q04857 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col6a1Q04857 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.74■□□□□ 0.91
Col6a1Q04857 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col6a1Q04857 Gm10698-201ENSMUST00000182663 604 ntBASIC20.74■□□□□ 0.91
Col6a1Q04857 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.74■□□□□ 0.91
Col6a1Q04857 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col6a1Q04857 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Col6a1Q04857 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Col6a1Q04857 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col6a1Q04857 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
Col6a1Q04857 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.74■□□□□ 0.91
Col6a1Q04857 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col6a1Q04857 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Col6a1Q04857 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Col6a1Q04857 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Col6a1Q04857 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC20.73■□□□□ 0.91
Col6a1Q04857 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC20.73■□□□□ 0.91
Col6a1Q04857 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col6a1Q04857 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
Col6a1Q04857 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Col6a1Q04857 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
Col6a1Q04857 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC20.72■□□□□ 0.91
Col6a1Q04857 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
Col6a1Q04857 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.72■□□□□ 0.91
Col6a1Q04857 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col6a1Q04857 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Col6a1Q04857 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.71■□□□□ 0.91
Col6a1Q04857 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.71■□□□□ 0.91
Col6a1Q04857 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.71■□□□□ 0.91
Col6a1Q04857 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.71■□□□□ 0.91
Col6a1Q04857 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.71■□□□□ 0.91
Col6a1Q04857 Gm9987-201ENSMUST00000069768 567 ntBASIC20.71■□□□□ 0.91
Col6a1Q04857 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Col6a1Q04857 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Col6a1Q04857 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col6a1Q04857 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.71■□□□□ 0.91
Col6a1Q04857 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Col6a1Q04857 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms