Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.69■□□□□ 0.42
Lire1P11260 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC17.69■□□□□ 0.42
Lire1P11260 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lire1P11260 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Lire1P11260 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Lire1P11260 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Lire1P11260 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC17.68■□□□□ 0.42
Lire1P11260 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Gm42642-201ENSMUST00000200683 355 ntBASIC17.68■□□□□ 0.42
Lire1P11260 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.68■□□□□ 0.42
Lire1P11260 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Golph3-205ENSMUST00000228671 2842 ntBASIC17.68■□□□□ 0.42
Lire1P11260 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lire1P11260 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
Lire1P11260 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Gm42569-201ENSMUST00000200539 472 ntBASIC17.67■□□□□ 0.42
Lire1P11260 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.67■□□□□ 0.42
Lire1P11260 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lire1P11260 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Lire1P11260 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Lire1P11260 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Lire1P11260 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.66■□□□□ 0.42
Lire1P11260 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.66■□□□□ 0.42
Lire1P11260 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.66■□□□□ 0.42
Lire1P11260 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.66■□□□□ 0.42
Lire1P11260 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC17.66■□□□□ 0.42
Lire1P11260 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.66■□□□□ 0.42
Lire1P11260 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lire1P11260 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lire1P11260 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lire1P11260 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lire1P11260 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Lire1P11260 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Lire1P11260 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.65■□□□□ 0.42
Lire1P11260 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lire1P11260 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.65■□□□□ 0.42
Lire1P11260 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.65■□□□□ 0.42
Lire1P11260 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lire1P11260 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lire1P11260 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Lire1P11260 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Lire1P11260 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lire1P11260 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Lire1P11260 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Lire1P11260 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lire1P11260 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.64■□□□□ 0.41
Lire1P11260 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.64■□□□□ 0.41
Lire1P11260 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lire1P11260 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Lire1P11260 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.64■□□□□ 0.41
Lire1P11260 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lire1P11260 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lire1P11260 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Lire1P11260 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lire1P11260 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lire1P11260 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Lire1P11260 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lire1P11260 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lire1P11260 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lire1P11260 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lire1P11260 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lire1P11260 Smad6-203ENSMUST00000179458 273 ntBASIC17.63■□□□□ 0.41
Lire1P11260 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lire1P11260 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms