Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Pcdha4O88689 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdha4O88689 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdha4O88689 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdha4O88689 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdha4O88689 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdha4O88689 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.05■□□□□ 0.96
Pcdha4O88689 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdha4O88689 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdha4O88689 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.05■□□□□ 0.96
Pcdha4O88689 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdha4O88689 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC21.05■□□□□ 0.96
Pcdha4O88689 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Pcdha4O88689 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Pcdha4O88689 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdha4O88689 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC21.04■□□□□ 0.96
Pcdha4O88689 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdha4O88689 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdha4O88689 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.04■□□□□ 0.96
Pcdha4O88689 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.04■□□□□ 0.96
Pcdha4O88689 Gm19094-201ENSMUST00000209791 1246 ntBASIC21.04■□□□□ 0.96
Pcdha4O88689 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
Pcdha4O88689 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdha4O88689 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pcdha4O88689 Gm42555-201ENSMUST00000199304 1039 ntBASIC21.03■□□□□ 0.96
Pcdha4O88689 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pcdha4O88689 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Pcdha4O88689 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pcdha4O88689 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pcdha4O88689 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Pcdha4O88689 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pcdha4O88689 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.02■□□□□ 0.96
Pcdha4O88689 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC21.02■□□□□ 0.96
Pcdha4O88689 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Pcdha4O88689 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Pcdha4O88689 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Pcdha4O88689 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Pcdha4O88689 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Pcdha4O88689 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Pcdha4O88689 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC21.01■□□□□ 0.95
Pcdha4O88689 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC21.01■□□□□ 0.95
Pcdha4O88689 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Pcdha4O88689 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdha4O88689 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdha4O88689 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdha4O88689 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdha4O88689 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC21■□□□□ 0.95
Pcdha4O88689 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Pcdha4O88689 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21■□□□□ 0.95
Pcdha4O88689 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Pcdha4O88689 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdha4O88689 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Pcdha4O88689 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.99■□□□□ 0.95
Pcdha4O88689 Gm12933-201ENSMUST00000120203 872 ntBASIC20.99■□□□□ 0.95
Pcdha4O88689 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.99■□□□□ 0.95
Pcdha4O88689 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Pcdha4O88689 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.99■□□□□ 0.95
Pcdha4O88689 Gm6365-201ENSMUST00000054711 744 ntBASIC20.99■□□□□ 0.95
Pcdha4O88689 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Pcdha4O88689 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Pcdha4O88689 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Pcdha4O88689 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Pcdha4O88689 Gm7290-201ENSMUST00000104990 617 ntBASIC20.98■□□□□ 0.95
Pcdha4O88689 Gm12918-201ENSMUST00000120234 636 ntBASIC20.98■□□□□ 0.95
Pcdha4O88689 Gm15710-201ENSMUST00000121821 636 ntBASIC20.98■□□□□ 0.95
Pcdha4O88689 Gm5075-201ENSMUST00000196916 622 ntBASIC20.98■□□□□ 0.95
Pcdha4O88689 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.98■□□□□ 0.95
Pcdha4O88689 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.98■□□□□ 0.95
Pcdha4O88689 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Pcdha4O88689 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms