Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Chd3B1AR17 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Chd3B1AR17 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd3B1AR17 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.49■□□□□ 0.55
Chd3B1AR17 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd3B1AR17 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Chd3B1AR17 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Chd3B1AR17 Gm10653-202ENSMUST00000139570 835 ntBASIC18.49■□□□□ 0.55
Chd3B1AR17 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.49■□□□□ 0.55
Chd3B1AR17 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Chd3B1AR17 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.48■□□□□ 0.55
Chd3B1AR17 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.48■□□□□ 0.55
Chd3B1AR17 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.48■□□□□ 0.55
Chd3B1AR17 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.48■□□□□ 0.55
Chd3B1AR17 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC18.48■□□□□ 0.55
Chd3B1AR17 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC18.48■□□□□ 0.55
Chd3B1AR17 Gm20049-201ENSMUST00000219950 730 ntBASIC18.48■□□□□ 0.55
Chd3B1AR17 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.48■□□□□ 0.55
Chd3B1AR17 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Chd3B1AR17 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Chd3B1AR17 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Gm13509-201ENSMUST00000119733 1308 ntBASIC18.47■□□□□ 0.55
Chd3B1AR17 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Gm37856-201ENSMUST00000191634 999 ntBASIC18.47■□□□□ 0.55
Chd3B1AR17 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Chd3B1AR17 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd3B1AR17 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.46■□□□□ 0.55
Chd3B1AR17 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd3B1AR17 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd3B1AR17 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.46■□□□□ 0.55
Chd3B1AR17 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Chd3B1AR17 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Chd3B1AR17 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.46■□□□□ 0.55
Chd3B1AR17 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Chd3B1AR17 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
Chd3B1AR17 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.45■□□□□ 0.54
Chd3B1AR17 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.45■□□□□ 0.54
Chd3B1AR17 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.45■□□□□ 0.54
Chd3B1AR17 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.45■□□□□ 0.54
Chd3B1AR17 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Chd3B1AR17 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Chd3B1AR17 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd3B1AR17 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd3B1AR17 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Chd3B1AR17 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd3B1AR17 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd3B1AR17 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.44■□□□□ 0.54
Chd3B1AR17 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Chd3B1AR17 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd3B1AR17 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
Chd3B1AR17 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Chd3B1AR17 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Dio3-201ENSMUST00000097228 1449 ntBASIC18.43■□□□□ 0.54
Chd3B1AR17 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.43■□□□□ 0.54
Chd3B1AR17 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.43■□□□□ 0.54
Chd3B1AR17 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.43■□□□□ 0.54
Chd3B1AR17 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Rab3c-203ENSMUST00000224180 967 ntBASIC18.43■□□□□ 0.54
Chd3B1AR17 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
Chd3B1AR17 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Chd3B1AR17 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC18.43■□□□□ 0.54
Chd3B1AR17 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd3B1AR17 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd3B1AR17 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd3B1AR17 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms