Protein–RNA interactions for Protein: A0A0B4J1G9

Trbv5, T cell receptor beta, variable 5 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv5A0A0B4J1G9 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Trbv5A0A0B4J1G9 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Trbv5A0A0B4J1G9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Trbv5A0A0B4J1G9 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Gm43530-201ENSMUST00000195920 274 ntBASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Nsd1-203ENSMUST00000224156 1149 ntBASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Trbv5A0A0B4J1G9 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trbv5A0A0B4J1G9 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Shroom3-211ENSMUST00000225438 5742 ntBASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trbv5A0A0B4J1G9 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv5A0A0B4J1G9 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv5A0A0B4J1G9 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv5A0A0B4J1G9 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trbv5A0A0B4J1G9 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 80.5 ms