Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.62■□□□□ 0.57
Lima1Q9ERG0 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Gm13241-201ENSMUST00000094493 780 ntBASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lima1Q9ERG0 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Gm21956-201ENSMUST00000179946 522 ntBASIC18.6■□□□□ 0.57
Lima1Q9ERG0 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.6■□□□□ 0.57
Lima1Q9ERG0 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Lima1Q9ERG0 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC18.58■□□□□ 0.57
Lima1Q9ERG0 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Lima1Q9ERG0 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Lima1Q9ERG0 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Lima1Q9ERG0 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Lima1Q9ERG0 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Gm43034-201ENSMUST00000198678 1364 ntBASIC18.55■□□□□ 0.56
Lima1Q9ERG0 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Lima1Q9ERG0 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms