Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf1Q9EPU0 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf1Q9EPU0 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Upf1Q9EPU0 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf1Q9EPU0 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf1Q9EPU0 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Gm17807-201ENSMUST00000186869 298 ntBASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Upf1Q9EPU0 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Gm18025-201ENSMUST00000221733 862 ntBASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf1Q9EPU0 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Mir5130-201ENSMUST00000175160 84 ntBASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Gm42545-201ENSMUST00000202755 922 ntBASIC21.73■■□□□ 1.07
Upf1Q9EPU0 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
Upf1Q9EPU0 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Upf1Q9EPU0 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Upf1Q9EPU0 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
Upf1Q9EPU0 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Gm22697-201ENSMUST00000175194 63 ntBASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Mtag2-201ENSMUST00000058665 714 ntBASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Upf1Q9EPU0 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Gm18669-201ENSMUST00000216049 778 ntBASIC21.69■■□□□ 1.06
Upf1Q9EPU0 AC134329.2-201ENSMUST00000217897 428 ntBASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf1Q9EPU0 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Upf1Q9EPU0 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Gm37292-201ENSMUST00000192062 758 ntBASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Upf1Q9EPU0 Gm8258-201ENSMUST00000055593 1449 ntBASIC21.66■■□□□ 1.06
Upf1Q9EPU0 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms