Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgn3Q9DCB1 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgn3Q9DCB1 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgn3Q9DCB1 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Gm43530-201ENSMUST00000195920 274 ntBASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgn3Q9DCB1 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgn3Q9DCB1 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgn3Q9DCB1 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Hmgn3Q9DCB1 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Hmgn3Q9DCB1 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Hmgn3Q9DCB1 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.7■□□□□ 0.42
Hmgn3Q9DCB1 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgn3Q9DCB1 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgn3Q9DCB1 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgn3Q9DCB1 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgn3Q9DCB1 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Hmgn3Q9DCB1 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
Hmgn3Q9DCB1 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgn3Q9DCB1 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms