Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cldnd1Q9CQX5 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cldnd1Q9CQX5 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cldnd1Q9CQX5 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cldnd1Q9CQX5 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cldnd1Q9CQX5 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.45■□□□□ 0.7
Cldnd1Q9CQX5 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Gm6433-201ENSMUST00000118634 875 ntBASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Gm10231-201ENSMUST00000181584 441 ntBASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Gm10175-202ENSMUST00000208752 441 ntBASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cldnd1Q9CQX5 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Gm43799-201ENSMUST00000201845 579 ntBASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cldnd1Q9CQX5 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cldnd1Q9CQX5 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cldnd1Q9CQX5 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cldnd1Q9CQX5 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Cldnd1Q9CQX5 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cldnd1Q9CQX5 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.39■□□□□ 0.69
Cldnd1Q9CQX5 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms