Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Nkx6-1Q99MA9 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Gm44549-201ENSMUST00000208351 577 ntBASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Nkx6-1Q99MA9 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Gm2399-201ENSMUST00000104944 225 ntBASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Mir1199-201ENSMUST00000117015 119 ntBASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Nkx6-1Q99MA9 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Nkx6-1Q99MA9 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Nkx6-1Q99MA9 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
Nkx6-1Q99MA9 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Nkx6-1Q99MA9 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.69■□□□□ 0.42
Nkx6-1Q99MA9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nkx6-1Q99MA9 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Nkx6-1Q99MA9 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
Nkx6-1Q99MA9 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nkx6-1Q99MA9 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.67■□□□□ 0.42
Nkx6-1Q99MA9 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms