Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ushbp1Q8R370 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ushbp1Q8R370 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ushbp1Q8R370 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ushbp1Q8R370 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC21.14■□□□□ 0.98
Ushbp1Q8R370 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ushbp1Q8R370 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ushbp1Q8R370 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ushbp1Q8R370 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Gm12933-201ENSMUST00000120203 872 ntBASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Gm27801-201ENSMUST00000184174 223 ntBASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ushbp1Q8R370 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ushbp1Q8R370 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Gm5540-201ENSMUST00000131852 1848 ntBASIC21.11■□□□□ 0.97
Ushbp1Q8R370 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 BC021767-201ENSMUST00000126387 1716 ntBASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Golph3-205ENSMUST00000228671 2842 ntBASIC21.1■□□□□ 0.97
Ushbp1Q8R370 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Ushbp1Q8R370 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms