Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm12896-201ENSMUST00000118430 226 ntBASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Usp40Q8BWR4 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp40Q8BWR4 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.76
Usp40Q8BWR4 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
Usp40Q8BWR4 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp40Q8BWR4 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC26.06■■□□□ 1.76
Usp40Q8BWR4 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp40Q8BWR4 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Usp40Q8BWR4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Usp40Q8BWR4 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC26.03■■□□□ 1.76
Usp40Q8BWR4 Gm10252-201ENSMUST00000209541 832 ntBASIC26.03■■□□□ 1.76
Usp40Q8BWR4 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC26.03■■□□□ 1.76
Usp40Q8BWR4 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Usp40Q8BWR4 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Usp40Q8BWR4 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
Usp40Q8BWR4 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Usp40Q8BWR4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp40Q8BWR4 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp40Q8BWR4 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Usp40Q8BWR4 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC26■■□□□ 1.75
Usp40Q8BWR4 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Usp40Q8BWR4 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
Usp40Q8BWR4 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Usp40Q8BWR4 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
Usp40Q8BWR4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC26■■□□□ 1.75
Usp40Q8BWR4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC26■■□□□ 1.75
Usp40Q8BWR4 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC26■■□□□ 1.75
Usp40Q8BWR4 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Usp40Q8BWR4 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
Usp40Q8BWR4 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC26■■□□□ 1.75
Usp40Q8BWR4 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms