Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trim56Q80VI1 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Trim56Q80VI1 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Trim56Q80VI1 AC131586.2-201ENSMUST00000228370 1512 ntBASIC22.36■■□□□ 1.17
Trim56Q80VI1 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trim56Q80VI1 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trim56Q80VI1 Gm42555-201ENSMUST00000199304 1039 ntBASIC22.36■■□□□ 1.17
Trim56Q80VI1 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trim56Q80VI1 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Trim56Q80VI1 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trim56Q80VI1 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Trim56Q80VI1 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Iqck-206ENSMUST00000208658 2891 ntBASIC22.35■■□□□ 1.17
Trim56Q80VI1 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Gm29257-201ENSMUST00000186115 639 ntBASIC22.35■■□□□ 1.17
Trim56Q80VI1 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Trim56Q80VI1 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Trim56Q80VI1 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC22.34■■□□□ 1.17
Trim56Q80VI1 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Trim56Q80VI1 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
Trim56Q80VI1 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Trim56Q80VI1 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Trim56Q80VI1 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Trim56Q80VI1 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Trim56Q80VI1 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trim56Q80VI1 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
Trim56Q80VI1 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Trim56Q80VI1 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC22.31■■□□□ 1.16
Trim56Q80VI1 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Trim56Q80VI1 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Gm10167-201ENSMUST00000150411 1479 ntBASIC22.3■■□□□ 1.16
Trim56Q80VI1 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Trim56Q80VI1 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms