Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Rncr4-201ENSMUST00000194541 2234 ntBASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Smarca1Q6PGB8 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Smarca1Q6PGB8 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Smarca1Q6PGB8 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Gm37179-201ENSMUST00000194862 823 ntBASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Smarca1Q6PGB8 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smarca1Q6PGB8 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21■□□□□ 0.95
Smarca1Q6PGB8 CT030146.1-201ENSMUST00000220919 217 ntBASIC21■□□□□ 0.95
Smarca1Q6PGB8 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Smarca1Q6PGB8 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smarca1Q6PGB8 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Smarca1Q6PGB8 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC21■□□□□ 0.95
Smarca1Q6PGB8 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Smarca1Q6PGB8 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.98■□□□□ 0.95
Smarca1Q6PGB8 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Smarca1Q6PGB8 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.96■□□□□ 0.95
Smarca1Q6PGB8 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.95■□□□□ 0.94
Smarca1Q6PGB8 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms