Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 Gm12441-201ENSMUST00000121806 588 ntBASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 Nespas-201ENSMUST00000143738 1083 ntBASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb4Q6P8W9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb4Q6P8W9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb4Q6P8W9 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.73■□□□□ 0.75
Hmgb4Q6P8W9 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb4Q6P8W9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC19.73■□□□□ 0.75
Hmgb4Q6P8W9 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb4Q6P8W9 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Gm6365-201ENSMUST00000054711 744 ntBASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb4Q6P8W9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb4Q6P8W9 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb4Q6P8W9 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb4Q6P8W9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Hmgb4Q6P8W9 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.7■□□□□ 0.74
Hmgb4Q6P8W9 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.7■□□□□ 0.74
Hmgb4Q6P8W9 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb4Q6P8W9 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb4Q6P8W9 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Gm10653-202ENSMUST00000139570 835 ntBASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb4Q6P8W9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Gm5408-201ENSMUST00000197998 747 ntBASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb4Q6P8W9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb4Q6P8W9 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Hmgb4Q6P8W9 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
Hmgb4Q6P8W9 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.67■□□□□ 0.74
Hmgb4Q6P8W9 Gm4968-201ENSMUST00000071458 858 ntBASIC19.67■□□□□ 0.74
Hmgb4Q6P8W9 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.67■□□□□ 0.74
Hmgb4Q6P8W9 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb4Q6P8W9 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Gm13148-201ENSMUST00000118892 745 ntBASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.66■□□□□ 0.74
Hmgb4Q6P8W9 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms