Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ubr3Q5U430 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ubr3Q5U430 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ubr3Q5U430 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ubr3Q5U430 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ubr3Q5U430 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ubr3Q5U430 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
Ubr3Q5U430 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ubr3Q5U430 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ubr3Q5U430 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ubr3Q5U430 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ubr3Q5U430 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ubr3Q5U430 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Gm21814-202ENSMUST00000203277 873 ntBASIC23.31■■□□□ 1.32
Ubr3Q5U430 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.31■■□□□ 1.32
Ubr3Q5U430 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
Ubr3Q5U430 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ubr3Q5U430 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ubr3Q5U430 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC23.29■■□□□ 1.32
Ubr3Q5U430 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC23.29■■□□□ 1.32
Ubr3Q5U430 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Ubr3Q5U430 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC23.28■■□□□ 1.32
Ubr3Q5U430 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ubr3Q5U430 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Ubr3Q5U430 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Ubr3Q5U430 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Ubr3Q5U430 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ubr3Q5U430 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC23.27■■□□□ 1.32
Ubr3Q5U430 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ubr3Q5U430 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ubr3Q5U430 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC23.27■■□□□ 1.32
Ubr3Q5U430 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
Ubr3Q5U430 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
Ubr3Q5U430 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Arhgef4-208ENSMUST00000211073 171 ntBASIC23.26■■□□□ 1.31
Ubr3Q5U430 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ubr3Q5U430 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ubr3Q5U430 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC23.25■■□□□ 1.31
Ubr3Q5U430 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
Ubr3Q5U430 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC23.25■■□□□ 1.31
Ubr3Q5U430 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC23.25■■□□□ 1.31
Ubr3Q5U430 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ubr3Q5U430 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Ubr3Q5U430 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ubr3Q5U430 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ubr3Q5U430 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ubr3Q5U430 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ubr3Q5U430 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Ubr3Q5U430 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Ubr3Q5U430 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ubr3Q5U430 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ubr3Q5U430 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC23.23■■□□□ 1.31
Ubr3Q5U430 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC23.23■■□□□ 1.31
Ubr3Q5U430 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ubr3Q5U430 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Ubr3Q5U430 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ubr3Q5U430 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Ubr3Q5U430 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Ubr3Q5U430 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Ubr3Q5U430 Gm7889-201ENSMUST00000185591 958 ntBASIC23.22■■□□□ 1.31
Ubr3Q5U430 Gm3375-201ENSMUST00000203929 796 ntBASIC23.22■■□□□ 1.31
Ubr3Q5U430 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC23.22■■□□□ 1.31
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms