Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav5d-4Q5R1F6 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav5d-4Q5R1F6 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Trav5d-4Q5R1F6 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Trav5d-4Q5R1F6 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
Trav5d-4Q5R1F6 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Trav5d-4Q5R1F6 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Gm43231-201ENSMUST00000202960 2258 ntBASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trav5d-4Q5R1F6 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Gm5540-201ENSMUST00000131852 1848 ntBASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Cdc34b-202ENSMUST00000188741 1252 ntBASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav5d-4Q5R1F6 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trav5d-4Q5R1F6 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms