Protein–RNA interactions for Protein: Q5R1B6

Trav8d-2, T cell receptor alpha variable 8D-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-2Q5R1B6 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Gm43672-201ENSMUST00000199072 1731 ntBASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav8d-2Q5R1B6 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav8d-2Q5R1B6 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trav8d-2Q5R1B6 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 AC160393.1-201ENSMUST00000218378 1279 ntBASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
Trav8d-2Q5R1B6 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Gm19094-201ENSMUST00000209791 1246 ntBASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.5■□□□□ 0.55
Trav8d-2Q5R1B6 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Mir5122-201ENSMUST00000175004 89 ntBASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav8d-2Q5R1B6 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Trav8d-2Q5R1B6 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Gm6433-201ENSMUST00000118634 875 ntBASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav8d-2Q5R1B6 Gm32699-201ENSMUST00000221728 1988 ntBASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav8d-2Q5R1B6 Flg-201ENSMUST00000050758 1488 ntBASIC18.46■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms