Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ptchd3Q0EEE2 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Ptchd3Q0EEE2 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.17■□□□□ 0.5
Ptchd3Q0EEE2 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ptchd3Q0EEE2 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Gm21956-201ENSMUST00000179946 522 ntBASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Gm13241-201ENSMUST00000094493 780 ntBASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ptchd3Q0EEE2 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ptchd3Q0EEE2 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.14■□□□□ 0.5
Ptchd3Q0EEE2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Gm43034-201ENSMUST00000198678 1364 ntBASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ptchd3Q0EEE2 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ptchd3Q0EEE2 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ptchd3Q0EEE2 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Ptchd3Q0EEE2 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ptchd3Q0EEE2 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ptchd3Q0EEE2 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms