Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
Col9a1Q05722 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC18.65■□□□□ 0.58
Col9a1Q05722 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Col9a1Q05722 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
Col9a1Q05722 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.64■□□□□ 0.58
Col9a1Q05722 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
Col9a1Q05722 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Gm18669-201ENSMUST00000216049 778 ntBASIC18.64■□□□□ 0.57
Col9a1Q05722 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.64■□□□□ 0.57
Col9a1Q05722 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Col9a1Q05722 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col9a1Q05722 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col9a1Q05722 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col9a1Q05722 Gm18958-201ENSMUST00000174258 762 ntBASIC18.63■□□□□ 0.57
Col9a1Q05722 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.63■□□□□ 0.57
Col9a1Q05722 Odf3b-204ENSMUST00000227834 930 ntBASIC18.63■□□□□ 0.57
Col9a1Q05722 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col9a1Q05722 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col9a1Q05722 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Col9a1Q05722 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC18.62■□□□□ 0.57
Col9a1Q05722 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col9a1Q05722 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col9a1Q05722 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col9a1Q05722 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col9a1Q05722 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col9a1Q05722 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col9a1Q05722 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Col9a1Q05722 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col9a1Q05722 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col9a1Q05722 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.6■□□□□ 0.57
Col9a1Q05722 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC18.6■□□□□ 0.57
Col9a1Q05722 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col9a1Q05722 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col9a1Q05722 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.6■□□□□ 0.57
Col9a1Q05722 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col9a1Q05722 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC18.6■□□□□ 0.57
Col9a1Q05722 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.59■□□□□ 0.57
Col9a1Q05722 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC18.59■□□□□ 0.57
Col9a1Q05722 Gm19891-201ENSMUST00000189771 303 ntBASIC18.59■□□□□ 0.57
Col9a1Q05722 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col9a1Q05722 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.58■□□□□ 0.56
Col9a1Q05722 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Col9a1Q05722 Gm45058-201ENSMUST00000205810 766 ntBASIC18.58■□□□□ 0.56
Col9a1Q05722 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col9a1Q05722 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col9a1Q05722 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Col9a1Q05722 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col9a1Q05722 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC18.57■□□□□ 0.56
Col9a1Q05722 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.57■□□□□ 0.56
Col9a1Q05722 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
Col9a1Q05722 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col9a1Q05722 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.56■□□□□ 0.56
Col9a1Q05722 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.56■□□□□ 0.56
Col9a1Q05722 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col9a1Q05722 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col9a1Q05722 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Col9a1Q05722 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col9a1Q05722 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col9a1Q05722 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col9a1Q05722 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.55■□□□□ 0.56
Col9a1Q05722 Gm3375-201ENSMUST00000203929 796 ntBASIC18.55■□□□□ 0.56
Col9a1Q05722 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.55■□□□□ 0.56
Col9a1Q05722 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col9a1Q05722 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms