Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Nkx3-1P97436 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC16.35■□□□□ 0.21
Nkx3-1P97436 Gm37563-201ENSMUST00000192580 1513 ntBASIC16.35■□□□□ 0.21
Nkx3-1P97436 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Nkx3-1P97436 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Gm34220-201ENSMUST00000223001 2709 ntBASIC16.34■□□□□ 0.21
Nkx3-1P97436 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Trmt13-210ENSMUST00000198454 880 ntBASIC16.34■□□□□ 0.21
Nkx3-1P97436 Gm10252-201ENSMUST00000209541 832 ntBASIC16.34■□□□□ 0.21
Nkx3-1P97436 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Nkx3-1P97436 Gm20100-201ENSMUST00000209418 2272 ntBASIC16.33■□□□□ 0.2
Nkx3-1P97436 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nkx3-1P97436 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Gm44878-201ENSMUST00000205812 1295 ntBASIC16.32■□□□□ 0.2
Nkx3-1P97436 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nkx3-1P97436 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Nkx3-1P97436 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nkx3-1P97436 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.3■□□□□ 0.2
Nkx3-1P97436 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Gm10812-201ENSMUST00000099864 546 ntBASIC16.3■□□□□ 0.2
Nkx3-1P97436 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nkx3-1P97436 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC16.29■□□□□ 0.2
Nkx3-1P97436 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Nkx3-1P97436 Gm10616-201ENSMUST00000205285 2127 ntBASIC16.28■□□□□ 0.2
Nkx3-1P97436 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Nkx3-1P97436 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms