Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shox2P70390 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shox2P70390 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Shox2P70390 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Shox2P70390 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shox2P70390 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Shox2P70390 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shox2P70390 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shox2P70390 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Shox2P70390 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.72■□□□□ 0.59
Shox2P70390 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shox2P70390 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shox2P70390 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shox2P70390 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Shox2P70390 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Shox2P70390 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Shox2P70390 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Shox2P70390 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Shox2P70390 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Shox2P70390 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.71■□□□□ 0.59
Shox2P70390 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Shox2P70390 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Shox2P70390 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Shox2P70390 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Shox2P70390 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.7■□□□□ 0.58
Shox2P70390 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.7■□□□□ 0.58
Shox2P70390 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.7■□□□□ 0.58
Shox2P70390 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.7■□□□□ 0.58
Shox2P70390 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Shox2P70390 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Shox2P70390 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.69■□□□□ 0.58
Shox2P70390 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.69■□□□□ 0.58
Shox2P70390 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.69■□□□□ 0.58
Shox2P70390 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC18.69■□□□□ 0.58
Shox2P70390 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Shox2P70390 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.68■□□□□ 0.58
Shox2P70390 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC18.68■□□□□ 0.58
Shox2P70390 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.68■□□□□ 0.58
Shox2P70390 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Shox2P70390 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.68■□□□□ 0.58
Shox2P70390 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Shox2P70390 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Shox2P70390 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
Shox2P70390 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Gm45444-201ENSMUST00000211394 898 ntBASIC18.67■□□□□ 0.58
Shox2P70390 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Shox2P70390 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Shox2P70390 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms