Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hmgb1P63158 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hmgb1P63158 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Hmgb1P63158 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hmgb1P63158 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hmgb1P63158 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.74■□□□□ 0.91
Hmgb1P63158 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Hmgb1P63158 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Hmgb1P63158 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hmgb1P63158 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb1P63158 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb1P63158 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Hmgb1P63158 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Hmgb1P63158 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.73■□□□□ 0.91
Hmgb1P63158 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb1P63158 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb1P63158 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Hmgb1P63158 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.73■□□□□ 0.91
Hmgb1P63158 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Hmgb1P63158 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Hmgb1P63158 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb1P63158 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Hmgb1P63158 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.72■□□□□ 0.91
Hmgb1P63158 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Gm27454-201ENSMUST00000185090 204 ntBASIC20.72■□□□□ 0.91
Hmgb1P63158 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.72■□□□□ 0.91
Hmgb1P63158 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Hmgb1P63158 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Hmgb1P63158 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hmgb1P63158 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Hmgb1P63158 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Hmgb1P63158 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Hmgb1P63158 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.71■□□□□ 0.91
Hmgb1P63158 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.71■□□□□ 0.91
Hmgb1P63158 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.71■□□□□ 0.91
Hmgb1P63158 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Hmgb1P63158 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Hmgb1P63158 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Hmgb1P63158 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Hmgb1P63158 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Hmgb1P63158 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Hmgb1P63158 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Hmgb1P63158 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Hmgb1P63158 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb1P63158 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Hmgb1P63158 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Hmgb1P63158 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Hmgb1P63158 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb1P63158 Gm7860-201ENSMUST00000121190 879 ntBASIC20.7■□□□□ 0.9
Hmgb1P63158 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb1P63158 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb1P63158 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb1P63158 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb1P63158 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Hmgb1P63158 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.69■□□□□ 0.9
Hmgb1P63158 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.69■□□□□ 0.9
Hmgb1P63158 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb1P63158 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Hmgb1P63158 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Hmgb1P63158 Gm6139-201ENSMUST00000079261 882 ntBASIC20.68■□□□□ 0.9
Hmgb1P63158 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.68■□□□□ 0.9
Hmgb1P63158 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb1P63158 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Hmgb1P63158 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Hmgb1P63158 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb1P63158 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.67■□□□□ 0.9
Hmgb1P63158 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb1P63158 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Hmgb1P63158 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb1P63158 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.67■□□□□ 0.9
Hmgb1P63158 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb1P63158 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms